| JcS_107805 | JcCA0043871(+) =JcCB0000571(+) |
| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| trembl | Q9ZRJ0_TOBAC | 1946 | 69.8 | 80.9 | (tr|Q9ZRJ0) Retrotransposon Tto1 DNA OS=Nicotiana tabacum PE=4 SV=1 |
| Arabidopsis_pep | AT4G23160.1 | 281 | 33.1 | 52.8 | | Symbols: | protein kinase family protein | chr4:12129485-12134086 FORWARD |
| soybean_pep | Glyma03g04980.1 | 808 | 38.6 | 55.7 | |
| Medicago_pep | IMGA|Medtr5g072700.1 | 427 | 29.1 | 46.8 | Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H EGN_Mt090430 20090702 |
| grape_pep | GSVIVT01028612001 | 334 | 32.0 | 51.8 | |
| castor_bean_cds | --No_Hits-- | ||||
| castor_bean_pep | --No_Hits-- | ||||
| JAT_13201ests | gi|268518791|gb|FM889034.1|FM889034 | 698 | 95.1 | 95.1 | FM889034 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002587, mRNA sequence |
| KJC_r1 | --No_Hits-- |
| JcCA0043871.20 | length: 1327 aa. | |||
| IPR001584 | Integrase, catalytic core | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003677 | DNA binding | ||
| Biological Process | GO:0015074 | DNA integration | ||
| HMMPfam | PF00665 | rve | 1.6e-31 | 482-594 |
| ProfileScan | PS50994 | INTEGRASE | 24.407 | 471-641 |
| IPR001878 | Zinc finger, CCHC-type | |||
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| Molecular Function | GO:0008270 | zinc ion binding | ||
| ProfileScan | PS50158 | ZF_CCHC | 9.455 | 236-251 |
| IPR012337 | Polynucleotidyl transferase, ribonuclease H fold | |||
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| superfamily | SSF53098 | Ribonuclease | 1e-41 | 472-633 |
| IPR013103 | Reverse transcriptase, RNA-dependent DNA polymerase | |||
| HMMPfam | PF07727 | RVT_2 | 1.5e-102 | 843-1090 |
| no_ID | ||||
| Gene3D | G3DSA:3.30.420.10 | no description | 7.6e-26 | 499-646 |
| HMMPanther | PTHR11439 | GAG-POL-RELATED | 0 | 7-1323 |
| Seg | seg | seg | NA | 747-762 848-861 1002-1018 |
| superfamily | SSF56672 | DNA/RNA | 3e-26 | 842-1286 |