Jatropha Genome Database

JcCA0036251.20 (JcS_100034.70)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0036251
Scaffold:
JcS_100034 JcCB0189361(+) =JcCA0199801(-) =JcCB0216831(+) =JcCA0149441(-) =JcCA0036251(+) =JcCA0047351(-) =JcCA0076481(-) =JcCB0268591(-) =JcCB0646891(-) =JcCA0075411(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl A5C5I0_VITVI 305 35.0 49.2 (tr|A5C5I0) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011587 PE=4 SV=1
Arabidopsis_pep --No_Hits--        
soybean_pep Glyma08g41350.1 288 62.6 76.6  
Medicago_pep IMGA|Medtr2g021830.1 192 71.7 84.2 RNA-directed DNA polymerase (Reverse transcriptase) chr02_pseudomolecule_IMGAG_V3 5672480-5674573 E EGN_Mt090430 20090702
grape_pep GSVIVT01000708001 63.2 38.6 53.4  
castor_bean_cds --No_Hits--        
castor_bean_pep 50372.m000011 70.9 34.9 48.1 conserved hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c13025 498 89.1 89.1  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0036251.20 length: 1291 aa.
IPR000467 D111/G-patch
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Cellular Component GO:0005622 intracellular    
HMMPfam PF01585 G-patch 2.8e-05 790-832
HMMSmart SM00443 no description 0.00017 786-833
ProfileScan PS50174 G_PATCH 12.151 788-835
no_ID  
Coil coil coiled-coil NA 953-974
Gene3D G3DSA:3.10.10.10 no description 3.6e-06 1123-1192
HMMPanther PTHR10178 GAG/POL/ENV 1.3e-68 2-1285
HMMPanther PTHR10178:SF14 RETROVIRUS 1.3e-68 2-1285
Seg seg seg NA 10-24
83-94
157-170
216-227
516-544
952-964
superfamily SSF56672 DNA/RNA 2.1e-57 1115-1277