Jatropha Genome Database

JcCA0029841.30 (JcS_109612.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0029841
Scaffold:
JcS_109612 JcCB0334901(+) =JcCA0029841(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl D7TZP5_VITVI 595 90.7 94.2 (tr|D7TZP5) Whole genome shotgun sequence of line PN40024, scaffold_2.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00016720001 PE=4 SV=1
Arabidopsis_pep AT1G17370.1 564 85.2 90.0 | Symbols: UBP1B | UBP1B (oligouridylate binding protein 1B); mRNA 3'-UTR binding | chr1:5951842-5954825 REVERSE
soybean_pep Glyma07g04640.1 592 90.0 93.9  
Medicago_pep IMGA|Medtr8g025650.1 561 88.0 92.0 RNA-binding region RNP-1 (RNA recognition motif) chr08_pseudomolecule_IMGAG_V3 5261567-5257902 E EGN_Mt090430 20090702
grape_pep GSVIVT01016720001 595 90.7 94.2  
castor_bean_cds 29727.m000492 1402 91.4 91.4 nucleolysin tia-1, putative
castor_bean_pep 29727.m000492 593 91.3 93.9 nucleolysin tia-1, putative
JAT_13201ests gi|268518657|gb|FM888900.1|FM888900 902 99.6 99.6 FM888900 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002417, mRNA sequence
KJC_r1 KJC_c00458 2014 99.6 99.6  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0029841.30 length: 361 aa.
IPR000504 RNA recognition motif, RNP-1
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 1.5e-11 56-122
141-211
262-328
HMMSmart SM00360 no description 3.4e-16 55-124
140-213
261-331
ProfileScan PS50102 RRM 14.658 54-128
139-217
260-335
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 6.6e-16 45-126
132-215
221-349
no_ID  
HMMPanther PTHR10432 RNA-BINDING 4.6e-135 48-352
HMMPanther PTHR10432:SF66 NUCLEOLYSIN 4.6e-135 48-352
Seg seg seg NA 2-24
221-232
336-360
superfamily SSF54928 RNA-binding 3.1e-17 133-214
19-132
255-343