Jatropha Genome Database

JcCA0028681.20 (JcS_201332.40)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0028681
Scaffold:
JcS_201332 JcCA0302221(+) =JcCA0028681(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q9C697_ARATH 664 36.4 55.2 (tr|Q9C697) Reverse transcriptase, putative; 16838-20266 OS=Arabidopsis thaliana GN=T6B12.3 PE=4 SV=1
Arabidopsis_pep AT4G29090.1 199 34.9 53.6 | Symbols: | reverse transcriptase, putative / RNA-dependent DNA polymerase, putative | chr4:14333528-14335255 FORWARD
soybean_pep Glyma13g22960.1 414 30.6 49.0  
Medicago_pep IMGA|Medtr2g117110.1 691 42.8 60.4 RNA-directed DNA polymerase (Reverse transcriptase); Hemopexin; Polynucleotidyl transferase, Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3 27457173-27452820 H EGN_Mt090430 20090702
grape_pep GSVIVT01004252001 115 26.7 44.5  
castor_bean_cds --No_Hits--        
castor_bean_pep 30068.m002537 190 28.0 42.0 conserved hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0028681.20 length: 1034 aa.
IPR000477 RNA-directed DNA polymerase (reverse transcriptase)
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0003964 RNA-directed DNA polymerase activity    
Biological Process GO:0006278 RNA-dependent DNA replication    
HMMPfam PF00078 RVT_1 2.4e-45 276-500
ProfileScan PS50878 RT_POL 14.492 251-516
IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related
HMMPanther PTHR19446 REVERSE 9.7e-287 3-881
no_ID  
HMMPanther PTHR19446:SF34 NON-LTR 9.7e-287 3-881
superfamily SSF56672 DNA/RNA 2.2e-06 246-498