Jatropha Genome Database

JcCA0028391.20 (JcS_103414.10)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0028391
Scaffold:
JcS_103414 JcCA0028391(-) =JcCB0890051(+) =JcCB0589371(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A5BE46_VITVI 1951 69.5 81.2 (tr|A5BE46) Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_025855 PE=4 SV=1
Arabidopsis_pep AT4G23160.1 333 37.8 59.0 | Symbols: | protein kinase family protein | chr4:12129485-12134086 FORWARD
soybean_pep Glyma02g36930.1 1348 51.3 68.4  
Medicago_pep IMGA|Medtr5g048830.1 436 30.1 49.7 Polynucleotidyl transferase, Ribonuclease H fold chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H EGN_Mt090430 20090702
grape_pep GSVIVT01014104001 744 46.1 63.0  
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c11255 1332 98.1 98.1  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0028391.20 length: 1337 aa.
IPR001584 Integrase, catalytic core
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0015074 DNA integration    
HMMPfam PF00665 rve 2.9e-24 490-616
ProfileScan PS50994 INTEGRASE 20.171 487-662
IPR001878 Zinc finger, CCHC-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00098 zf-CCHC 5.1e-05 248-265
HMMSmart SM00343 no description 0.00035 249-265
ProfileScan PS50158 ZF_CCHC 9.735 249-265
IPR012337 Polynucleotidyl transferase, ribonuclease H fold
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 1.4e-34 483-662
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
HMMPfam PF07727 RVT_2 9.4e-95 859-1105
no_ID  
Coil coil coiled-coil NA 80-101
Gene3D G3DSA:3.30.420.10 no description 6.9e-16 510-651
HMMPanther PTHR11439 GAG-POL-RELATED 0 10-1336
Seg seg seg NA 778-795
1286-1295
superfamily SSF56672 DNA/RNA 1.3e-27 858-1305