Jatropha Genome Database

JcCA0028051.10 (JcS_104271.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0028051
Scaffold:
JcS_104271 JcCB0231041(-) =JcCA0150831(-) =JcCA0028051(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SRF9_RICCO 262 52.1 66.7 (tr|B9SRF9) Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0382000 PE=4 SV=1
Arabidopsis_pep AT5G12100.1 199 42.8 59.0 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:3911388-3913838 FORWARD
soybean_pep Glyma03g34810.1 211 47.5 64.3  
Medicago_pep IMGA|Medtr3g117400.1 113 31.5 59.5 Pentatricopeptide repeat chr03_pseudomolecule_IMGAG_V3 29564928-29563145 E EGN_Mt090430 20090702
grape_pep GSVIVT01026178001 115 33.7 53.8  
castor_bean_cds 29092.m000445 141 84.9 84.9 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 29092.m000445 262 52.1 66.7 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0028051.10 length: 280 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 1.2e-10 112-136
144-172
183-207
213-240
247-277
HMMTigr TIGR00756 PPR: 2.4e-06 107-141
142-176
177-211
212-246
247-280
ProfileScan PS51375 PPR 13.044 105-139
140-174
175-209
210-244
245-279
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 2e-46 112-280
Seg seg seg NA 75-98
superfamily SSF48452 TPR-like 7.5e-10 106-278