Jatropha Genome Database

JcCA0025111.20 (JcS_101188.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0025111
Scaffold:
JcS_101188 JcCB0362101(-) =JcCB0279751(-) =JcCB0269501(+) =JcCA0025111(+) =JcCB0740801(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q1EMR8_PLAMJ 124 96.7 100.0 (tr|Q1EMR8) MADS-box transcription factor OS=Plantago major GN=soc1 PE=2 SV=1
Arabidopsis_pep AT4G11880.1 121 95.0 100.0 | Symbols: AGL14 | AGL14 (agamous-like 14); DNA binding / transcription factor | chr4:7143512-7147108 FORWARD
soybean_pep Glyma18g45780.1 123 96.7 100.0  
Medicago_pep IMGA|Medtr7g083460.1 120 96.7 100.0 Transcription factor, MADS-box chr07_pseudomolecule_IMGAG_V3 17829732-17826840 E EGN_Mt090430 20090702
grape_pep GSVIVT01027579001 122 96.7 98.3  
castor_bean_cds 30147.m014133 77.8 82.4 82.4 mads box protein, putative
castor_bean_pep 30147.m014133 108 83.3 95.0 mads box protein, putative
JAT_13201ests gi|262091321|gb|GT228748.1|GT228748 48.1 87.5 87.5 JC313 Jatropha seeds from fruits at three stages of maturation Jatropha curcas cDNA clone PL06SE.E07.scf 5', mRNA sequence
KJC_r1 KJC_c11682 331 98.9 98.9  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0025111.20 length: 61 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
FPrintScan PR00404 MADSDOMAIN 1.3e-31 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 2.8e-29 10-59
HMMSmart SM00432 no description 4e-41 1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
ProfileScan PS50066 MADS_BOX_2 31.623 1-61
superfamily SSF55455 SRF-like 9.8e-27 1-61
no_ID  
HMMPanther PTHR11945 MADS 1.4e-43 10-61
HMMPanther PTHR11945:SF19 MADS 1.4e-43 10-61