Jatropha Genome Database

JcCA0020521.10 (JcS_102081.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0020521
Scaffold:
JcS_102081 JcCB0021001(+) =JcCA0313541(+) =JcCA0302931(-) =JcCA0020521(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RM04_RICCO 488 78.0 79.6 (tr|B9RM04) Leucine zipper-ef-hand containing transmembrane protein, putative OS=Ricinus communis GN=RCOM_1076740 PE=4 SV=1
Arabidopsis_pep AT1G65540.1 401 64.9 74.1 | Symbols: | calcium-binding EF hand family protein | chr1:24362382-24366011 REVERSE
soybean_pep Glyma05g30090.2 395 63.7 71.4  
Medicago_pep IMGA|Medtr7g090240.1 365 59.2 66.6 LETM1-like chr07_pseudomolecule_IMGAG_V3 20081490-20075571 H EGN_Mt090430 20090702
grape_pep GSVIVT01004001001 442 69.8 75.7  
castor_bean_cds 29929.m004507 761 90.3 90.3 leucine zipper-ef-hand containing transmembrane protein, putative
castor_bean_pep 29929.m004507 488 78.0 79.6 leucine zipper-ef-hand containing transmembrane protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c06426 745 99.7 99.7  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0020521.10 length: 339 aa.
IPR011685 LETM1-like
method AccNumber shortName E-value location
HMMPfam PF07766 LETM1 1.7e-15 2-57
IPR011992 EF-hand-like domain
Molecular Function GO:0005509 calcium ion binding    
Gene3D G3DSA:1.10.238.10 no description 7.8e-05 263-329
IPR018249 EF-HAND 2
ProfileScan PS50222 EF_HAND_2 7.065 260-295
296-331
no_ID  
Coil coil coiled-coil NA 105-136
213-234
244-265
HMMPanther PTHR14009 LEUCINE 4.5e-80 1-332
HMMPanther PTHR14009:SF1 LEUCINE 4.5e-80 1-332
Seg seg seg NA 106-131
169-189
211-226
superfamily SSF47473 EF-hand 5.4e-08 192-325