| JcS_100024 | JcCA0019701(+) =JcCD0071482(-) =JcCD0058471(-) =JcCB0387971(+) =JcCB0022671(-) =JcCA0224481(+) =JcCA0302271(-) =JcCB0394631(+) =JcCA0299231(+) =JcCB0360521(+) |
| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| trembl | B9I828_POPTR | 185 | 81.6 | 83.3 | (tr|B9I828) Histone H2A OS=Populus trichocarpa GN=HTA910 PE=3 SV=1 |
| Arabidopsis_pep | AT1G54690.1 | 177 | 78.1 | 80.7 | | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX); DNA binding | chr1:20414607-20415206 REVERSE |
| soybean_pep | Glyma19g42760.1 | 181 | 79.8 | 83.3 | |
| Medicago_pep | IMGA|Medtr7g139850.1 | 183 | 80.7 | 83.3 | Histone H2A; Histone-fold chr07_pseudomolecule_IMGAG_V3 33556121-33556949 F EGN_Mt090430 20090702 |
| grape_pep | GSVIVT01011033001 | 181 | 79.8 | 82.5 | |
| castor_bean_cds | 29647.m002053 | 387 | 88.1 | 88.1 | histone h2a, putative |
| castor_bean_pep | 30128.m008694 | 177 | 78.1 | 81.6 | histone h2a, putative |
| JAT_13201ests | gi|268519445|gb|FM887912.1|FM887912 | 391 | 100.0 | 100.0 | FM887912 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001201, mRNA sequence |
| KJC_r1 | KJC_c03789 | 684 | 97.9 | 97.9 |
| JcCA0019701.10 | length: 139 aa. | |||
| IPR002119 | Histone H2A | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Cellular Component | GO:0000786 | nucleosome | ||
| Molecular Function | GO:0003677 | DNA binding | ||
| Cellular Component | GO:0005634 | nucleus | ||
| Biological Process | GO:0006334 | nucleosome assembly | ||
| FPrintScan | PR00620 | HISTONEH2A | 1.6e-51 | 18-40 47-62 62-75 76-90 104-122 |
| HMMPanther | PTHR23430 | HISTONE | 1.5e-68 | 11-127 |
| HMMSmart | SM00414 | no description | 9e-78 | 7-127 |
| PatternScan | PS00046 | HISTONE_H2A | NA | 26-32 |
| IPR007125 | Histone core | |||
| Molecular Function | GO:0003677 | DNA binding | ||
| HMMPfam | PF00125 | Histone | 4e-26 | 22-95 |
| IPR009072 | Histone-fold | |||
| Molecular Function | GO:0003677 | DNA binding | ||
| Gene3D | G3DSA:1.10.20.10 | no description | 7.8e-48 | 5-133 |
| superfamily | SSF47113 | Histone-fold | 1.8e-42 | 6-133 |
| no_ID | ||||
| Seg | seg | seg | NA | 2-25 54-71 |