Jatropha Genome Database

JcCA0013701.10 (JcS_104822.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0013701
Scaffold:
JcS_104822 JcCB0435081(+) =JcCA0299701(-) =JcCA0013701(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RKY3_RICCO 123 87.5 90.6 (tr|B9RKY3) Transcription factor, putative OS=Ricinus communis GN=RCOM_1565520 PE=3 SV=1
Arabidopsis_pep AT2G17410.1 99.4 71.9 78.1 | Symbols: | ARID/BRIGHT DNA-binding domain-containing protein | chr2:7559869-7563474 FORWARD
soybean_pep Glyma01g36040.1 106 73.4 82.8  
Medicago_pep IMGA|Medtr5g024850.1 103 73.4 79.7 AT-rich interaction region; Heat shock protein Hsp20 chr05_pseudomolecule_IMGAG_V3 9945418-9937499 E EGN_Mt090430 20090702
grape_pep GSVIVT01026435001 107 78.1 82.8  
castor_bean_cds 30162.m001290 722 87.1 87.1 transcription factor, putative
castor_bean_pep 30162.m001290 123 87.5 90.6 transcription factor, putative
JAT_13201ests gi|268519242|gb|FM887709.1|FM887709 369 100.0 100.0 FM887709 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000960, mRNA sequence
KJC_r1 KJC_c09092 115 80.6 80.6  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0013701.10 length: 265 aa.
IPR001606 ARID/BRIGHT DNA-binding domain
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005622 intracellular    
Gene3D G3DSA:1.10.150.60 no description 3.4e-06 1-41
HMMPfam PF01388 ARID 8.7e-06 1-39
ProfileScan PS51011 ARID 13.607 1-43
superfamily SSF46774 ARID-like 2.3e-09 1-54