Jatropha Genome Database

JcCA0012011.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0012011
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9T777_RICCO 228 67.0 71.7 (tr|B9T777) DNA binding protein, putative OS=Ricinus communis GN=RCOM_0168650 PE=4 SV=1
Arabidopsis_pep AT1G71450.1 186 55.4 61.6 | Symbols: | AP2 domain-containing transcription factor, putative | chr1:26927088-26927639 FORWARD
soybean_pep Glyma11g01640.1 187 59.4 68.3  
Medicago_pep IMGA|Medtr5g008620.1 182 59.4 69.4 Pathogenesis-related transcriptional factor and ERF chr05_pseudomolecule_IMGAG_V3 1662978-1663541 H EGN_Mt090430 20090702
grape_pep GSVIVT01036389001 145 51.8 59.6  
castor_bean_cds 28118.m000034 93.7 81.1 81.1 DNA binding protein, putative
castor_bean_pep 28118.m000034 228 67.0 71.7 DNA binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0012011.10 length: 186 aa.
IPR001471 Pathogenesis-related transcriptional factor/ERF, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 6.3e-13 15-26
53-73
Gene3D G3DSA:3.30.730.10 no description 1.9e-23 13-74
HMMPfam PF00847 AP2 3.8e-16 13-63
HMMSmart SM00380 no description 6e-40 14-77
ProfileScan PS51032 AP2_ERF 23.894 14-71
IPR016177 DNA-binding, integrase-type
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 1.2e-24 13-74
no_ID  
Seg seg seg NA 106-124
153-165