Jatropha Genome Database

JcCA0009771.20 (JcS_100048.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0009771
Scaffold:
JcS_100048 JcCD0125670(-) =JcCD0183850(-) =JcCB0689361(-) =JcCA0122321(+) =JcCB0580691(+) =JcCA0027271(-) =JcCA0009771(+) =JcCB0075691(+) =JcCB0458291(+) =JcCB0097211(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9R706_RICCO 610 86.1 90.6 (tr|B9R706) E3 ubiquitin ligase PUB14, putative OS=Ricinus communis GN=RCOM_1587530 PE=4 SV=1
Arabidopsis_pep AT3G01400.1 551 77.7 86.5 | Symbols: | armadillo/beta-catenin repeat family protein | chr3:151920-152987 FORWARD
soybean_pep Glyma17g35390.1 532 79.3 87.5  
Medicago_pep IMGA|Medtr1g023190.1 541 83.1 88.5 Armadillo chr01_pseudomolecule_IMGAG_V3 5077764-5075347 E EGN_Mt090430 20090702
grape_pep GSVIVT01009347001 546 78.6 85.2  
castor_bean_cds 30170.m013742 674 83.3 83.3 E3 ubiquitin ligase PUB14, putative
castor_bean_pep 30170.m013742 610 86.1 90.6 E3 ubiquitin ligase PUB14, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c09906 436 99.6 99.6  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0009771.20 length: 352 aa.
IPR000225 Armadillo
method AccNumber shortName E-value location
HMMPfam PF00514 Arm 7.1e-06 92-130
132-171
175-213
HMMSmart SM00185 no description 8.3 91-131
132-172
173-213
214-254
255-295
ProfileScan PS50176 ARM_REPEAT 8.522 102-144
143-185
IPR011989 Armadillo-like helical
Molecular Function GO:0005488 binding    
Gene3D G3DSA:1.25.10.10 no description 4.7e-53 58-337
IPR016024 Armadillo-type fold
Molecular Function GO:0005488 binding    
superfamily SSF48371 ARM 2.4e-55 58-337
no_ID  
HMMPanther PTHR23315 BETA 1.4e-15 70-193
HMMPanther PTHR23315:SF8 VACUOLAR 1.4e-15 70-193
Seg seg seg NA 107-119