Jatropha Genome Database

JcCA0009632.20 (JcS_109531.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0009632
Scaffold:
JcS_109531 JcCB0315121(-) =JcCA0009632(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RFJ2_RICCO 223 70.4 77.6 (tr|B9RFJ2) Homeobox protein knotted-1, putative OS=Ricinus communis GN=RCOM_1435170 PE=3 SV=1
Arabidopsis_pep AT4G08150.1 128 51.2 63.0 | Symbols: KNAT1, BP, BP1 | KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA); transcription factor | chr4:5147969-5150610 REVERSE
soybean_pep Glyma10g28820.1 186 56.0 65.7  
Medicago_pep IMGA|Medtr1g100620.1 165 56.0 68.7 ELK; Homeodomain-related chr01_pseudomolecule_IMGAG_V3 20954185-20951220 E EGN_Mt090430 20090702
grape_pep GSVIVT01031241001 211 68.2 77.0  
castor_bean_cds 30128.m008910 426 89.0 89.0 homeobox protein knotted-1, putative
castor_bean_pep 30128.m008910 223 70.4 77.6 homeobox protein knotted-1, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0009632.20 length: 239 aa.
IPR001356 Homeobox
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMPfam PF00046 Homeobox 1.2e-06 169-202
HMMSmart SM00389 no description 4e-13 144-209
ProfileScan PS50071 HOMEOBOX_2 12.244 142-205
IPR005539 ELK
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03789 ELK 6.9e-09 124-143
ProfileScan PS51213 ELK 10.371 122-142
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 9.4e-18 143-220
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 5e-22 144-216
IPR017970 Homeobox, conserved site
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0030528 transcription regulator activity    
Molecular Function GO:0043565 sequence-specific DNA binding    
PatternScan PS00027 HOMEOBOX_1 NA 180-203
no_ID  
HMMPanther PTHR11850 HOMEOBOX 3.6e-50 135-223
HMMPanther PTHR11850:SF15 HOMEOBOX 3.6e-50 135-223
Seg seg seg NA 138-156