| JcS_105187 | JcCB0580571(-) =JcCA0006671(+) =JcPR04HGFY6(-) |
| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| trembl | Q53ND1_ORYSJ | 1201 | 59.8 | 75.7 | (tr|Q53ND1) Retrotransposon protein, putative, Ty1-copia sub-class OS=Oryza sativa subsp. japonica GN=LOC_Os11g05840 PE=4 SV=1 |
| Arabidopsis_pep | AT4G23160.1 | 309 | 36.9 | 56.7 | | Symbols: | protein kinase family protein | chr4:12129485-12134086 FORWARD |
| soybean_pep | Glyma06g18690.1 | 1063 | 55.8 | 69.8 | |
| Medicago_pep | IMGA|Medtr5g072700.1 | 486 | 34.5 | 50.8 | Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H EGN_Mt090430 20090702 |
| grape_pep | GSVIVT01028612001 | 250 | 39.0 | 55.1 | |
| castor_bean_cds | --No_Hits-- | ||||
| castor_bean_pep | --No_Hits-- | ||||
| JAT_13201ests | --No_Hits-- | ||||
| KJC_r1 | --No_Hits-- |
| JcCA0006671.10 | length: 1280 aa. | |||
| IPR001584 | Integrase, catalytic core | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003677 | DNA binding | ||
| Biological Process | GO:0015074 | DNA integration | ||
| HMMPfam | PF00665 | rve | 4.3e-29 | 423-537 |
| ProfileScan | PS50994 | INTEGRASE | 20.941 | 418-584 |
| IPR012337 | Polynucleotidyl transferase, ribonuclease H fold | |||
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| superfamily | SSF53098 | Ribonuclease | 1.7e-40 | 414-584 |
| IPR013103 | Reverse transcriptase, RNA-dependent DNA polymerase | |||
| HMMPfam | PF07727 | RVT_2 | 3.2e-105 | 776-1024 |
| no_ID | ||||
| Gene3D | G3DSA:3.30.420.10 | no description | 1.5e-27 | 426-589 |
| HMMPanther | PTHR11439 | GAG-POL-RELATED | 0 | 280-1265 |
| Seg | seg | seg | NA | 656-669 844-858 |
| superfamily | SSF56672 | DNA/RNA | 2.9e-27 | 775-1223 |