Jatropha Genome Database

JcCA0003592.20 (JcS_201363.10)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0003592
Scaffold:
JcS_201363 JcCA0003592(-) =JcCB0826111(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A5CAZ4_VITVI 142 38.3 59.3 (tr|A5CAZ4) Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_040293 PE=4 SV=1
Arabidopsis_pep --No_Hits--        
soybean_pep Glyma10g18830.1 131 33.2 50.2  
Medicago_pep IMGA|Medtr3g059250.1 70.5 28.2 47.9 Retrotransposon gag protein chr03_pseudomolecule_IMGAG_V3 13301930-13300773 H EGN_Mt090430 20090702
grape_pep --No_Hits--        
castor_bean_cds --No_Hits--        
castor_bean_pep 30065.m001158 111 52.2 77.2 conserved hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0003592.20 length: 426 aa.
IPR005162 Retrotransposon gag protein
method AccNumber shortName E-value location
HMMPfam PF03732 Retrotrans_gag 1.2e-08 188-254
no_ID  
Coil coil coiled-coil NA 30-51
109-130
HMMPanther PTHR10178 GAG/POL/ENV 1.5e-11 7-245
HMMPanther PTHR10178:SF10 GAG 1.5e-11 7-245
Seg seg seg NA 64-84