Jatropha Genome Database

JcCA0003212.20 (JcS_100319.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0003212
Scaffold:
JcS_100319 JcCB0495181(-) =JcCB0369881(+) =JcCB0569331(+) =JcCB0097471(+) =JcCB0538041(+) =JcCA0003212(+) =JcCB0234291(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A9PDV6_POPTR 303 98.0 99.3 (tr|A9PDV6) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_666912 PE=2 SV=1
Arabidopsis_pep AT4G00100.1 288 92.7 98.0 | Symbols: ATRPS13A, RPS13, PFL2 | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A); structural constituent of ribosome | chr4:37172-38123 FORWARD
soybean_pep Glyma17g14370.1 298 96.0 99.3  
Medicago_pep IMGA|Medtr4g025470.1 290 93.4 97.4 S15/NS1, RNA-binding; Ribosomal S13S15 N-terminal chr04_pseudomolecule_IMGAG_V3 6055966-6059386 F EGN_Mt090430 20090702
grape_pep GSVIVT01027637001 298 95.4 100.0  
castor_bean_cds 30174.m008862 555 90.4 90.4 40S ribosomal protein S13, putative
castor_bean_pep 30174.m008862 296 96.0 99.3 40S ribosomal protein S13, putative
JAT_13201ests gi|268524451|gb|FM895131.1|FM895131 904 100.0 100.0 FM895131 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001909, mRNA sequence
KJC_r1 KJC_c03099 848 99.1 99.1  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0003212.20 length: 151 aa.
IPR000589 Ribosomal protein S15
method AccNumber shortName E-value location
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
HMMPfam PF00312 Ribosomal_S15 1.2e-24 66-148
PatternScan PS00362 RIBOSOMAL_S15 NA 98-128
IPR009068 S15/NS1, RNA-binding
superfamily SSF47060 S15/NS1 9.6e-22 65-142
IPR012606 Ribosomal protein S13/S15, N-terminal
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
HMMPfam PF08069 Ribosomal_S13_N 6.1e-32 1-60
no_ID  
HMMPanther PTHR11885 RIBOSOMAL 5.8e-120 2-151
HMMPanther PTHR11885:SF1 40S 5.8e-120 2-151