Jatropha Genome Database

JcCA0002951.10 (JcS_200657.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0002951
Scaffold:
JcS_200657 JcCB0150481(+) =JcPR02FI4WS(+) =JcCA0002951(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RQ93_RICCO 410 79.3 84.9 (tr|B9RQ93) RNA polymerase II mediator complex subunit, putative OS=Ricinus communis GN=RCOM_1486710 PE=4 SV=1
Arabidopsis_pep AT3G21350.1 312 68.6 75.5 | Symbols: | RNA polymerase transcriptional regulation mediator-related | chr3:7517106-7518587 FORWARD
soybean_pep Glyma08g21290.2 357 74.6 81.6  
Medicago_pep --No_Hits--        
grape_pep GSVIVT01016927001 358 77.4 82.7  
castor_bean_cds 30146.m003455 718 87.2 87.2 RNA polymerase II mediator complex subunit, putative
castor_bean_pep 30146.m003455 410 79.3 84.9 RNA polymerase II mediator complex subunit, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0002951.10 length: 249 aa.
IPR007018 Mediator complex, subunit Med6
method AccNumber shortName E-value location
Biological Process GO:0006357 regulation of transcription from RNA polymerase II promoter    
Molecular Function GO:0016455 RNA polymerase II transcription mediator activity    
Cellular Component GO:0016592 mediator complex    
HMMPanther PTHR13104 MED-6-RELATED 3e-58 10-249
HMMPfam PF04934 Med6 3.7e-40 28-153
IPR016820 Mediator complex, subunit Med6, metazoa/plant
Biological Process GO:0006357 regulation of transcription from RNA polymerase II promoter    
Molecular Function GO:0016455 RNA polymerase II transcription mediator activity    
Cellular Component GO:0016592 mediator complex    
HMMPIR PIRSF023869 RNA 2e-117 1-249
no_ID  
Seg seg seg NA 14-21
198-214