Jatropha Genome Database

JcCA0000872.10 (JcS_102398.50)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0000872
Scaffold:
JcS_102398 JcCB0050881(-) =JcCB0034131(+) =JcCA0000872(-) =JcCA0003591(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A5BSJ3_VITVI 227 45.7 67.9 (tr|A5BSJ3) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008285 PE=4 SV=1
Arabidopsis_pep --No_Hits--        
soybean_pep Glyma05g17700.1 200 41.6 63.3  
Medicago_pep IMGA|Medtr6g077060.1 193 42.5 60.6 RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H chr06_pseudomolecule_IMGAG_V3 15141903-15146629 E EGN_Mt090430 20090702
grape_pep GSVIVT01018780001 81.3 24.7 42.9  
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0000872.10 length: 761 aa.
no_ID  
method AccNumber shortName E-value location
HMMPanther PTHR10178 GAG/POL/ENV 4.8e-41 68-472
HMMPanther PTHR10178:SF14 RETROVIRUS 4.8e-41 68-472
Seg seg seg NA 95-109
233-245
540-553
superfamily SSF56672 DNA/RNA 3.7e-34 254-453