Jatropha Genome Database

JcCA0000182.20  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0000182
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A5B120_VITVI 570 45.4 65.2 (tr|A5B120) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028523 PE=4 SV=1
Arabidopsis_pep AT3G01410.2 62.0 30.2 45.7 | Symbols: | RNase H domain-containing protein | chr3:153650-155439 REVERSE
soybean_pep Glyma08g41350.1 504 42.6 62.8  
Medicago_pep IMGA|Medtr6g077060.1 492 43.3 61.4 RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H chr06_pseudomolecule_IMGAG_V3 15141903-15146629 E EGN_Mt090430 20090702
grape_pep GSVIVT01012583001 82.0 37.5 63.5  
castor_bean_cds --No_Hits--        
castor_bean_pep 29930.m000615 72.0 41.6 58.4 conserved hypothetical protein
JAT_13201ests gi|268520575|gb|FM889333.1|FM889333 105 80.4 80.4 FM889333 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002972, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0000182.20 length: 653 aa.
IPR001584 Integrase, catalytic core
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0015074 DNA integration    
HMMPfam PF00665 rve 3.9e-25 364-479
ProfileScan PS50994 INTEGRASE 23.958 360-521
IPR002156 Ribonuclease H
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004523 ribonuclease H activity    
HMMPfam PF00075 RnaseH 1.5e-10 75-197
ProfileScan PS50879 RNASE_H 13.233 73-202
IPR012337 Polynucleotidyl transferase, ribonuclease H fold
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 2.1e-21 359-521
77-201
no_ID  
Gene3D G3DSA:3.30.420.10 no description 2.4e-32 73-215
366-526
HMMPanther PTHR10178 GAG/POL/ENV 2.4e-93 56-652
HMMPanther PTHR10178:SF14 RETROVIRUS 2.4e-93 56-652