Jatropha Genome Database

JcCA0000051.40 (JcS_200001.80)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0000051
Scaffold:
JcS_200001 JcPR01BHB71(-) =JcCA0170351(-) =JcPR04G2FGI(-) =JcPR04J2HZ7(-) =JcCB0462781(+) =JcPR04IANHZ(-) =JcCA0000041(-) =JcCA0000051(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q8L6A3_VITVI 322 97.5 98.2 (tr|Q8L6A3) Putative ribosomal protein L2 (Fragment) OS=Vitis vinifera GN=rpl2 PE=4 SV=1
Arabidopsis_pep ATCG01310.1 277 89.1 91.7 | Symbols: RPL2.2 | encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex | chrC:152806-154312 FORWARD
soybean_pep Glyma19g07190.1 132 63.4 69.6  
Medicago_pep IMGA|Medtr3g043780.1 273 95.8 98.6 Ribosomal protein L2 chr03_pseudomolecule_IMGAG_V3 12001684-12002286 F EGN_Mt090430 20090702
grape_pep GSVIVT01038218001 123 53.7 65.9  
castor_bean_cds 29929.m004740 571 98.1 98.1 50S ribosomal protein L2, putative
castor_bean_pep 29929.m004740 202 96.2 97.1 50S ribosomal protein L2, putative
JAT_13201ests gi|268517431|gb|FM889149.1|FM889149 773 97.6 97.6 FM889149 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002735, mRNA sequence
KJC_r1 KJC_c00048 1005 98.7 98.7  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0000051.40 length: 176 aa.
IPR002171 Ribosomal protein L2
method AccNumber shortName E-value location
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
HMMPanther PTHR13691 RIBOSOMAL 6.4e-79 33-175
HMMPfam PF03947 Ribosomal_L2_C 6.5e-52 34-153
PatternScan PS00467 RIBOSOMAL_L2 NA 118-129
IPR005880 Ribosomal protein L2, bacterial-type
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0003735 structural constituent of ribosome    
Biological Process GO:0006412 translation    
Cellular Component GO:0015934 large ribosomal subunit    
Molecular Function GO:0016740 transferase activity    
HMMPanther PTHR13691:SF5 50S 6.4e-79 33-175
HMMTigr TIGR01171 rplB_bact: 2.3e-35 20-176
IPR008991 Translation protein SH3-like
superfamily SSF50104 Translation 4.9e-48 35-169
IPR014722 Translation protein SH3-like, subgroup
Gene3D G3DSA:2.30.30.30 no description 1e-19 18-97