Jatropha Genome Database

JcCA0000015.50 (JcS_105994.50)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0000015
Scaffold:
JcS_105994 JcCA0000015(+) =JcCB0339381(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q2QQV8_ORYSJ 398 33.2 51.4 (tr|Q2QQV8) Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os12g29700 PE=4 SV=1
Arabidopsis_pep AT4G29090.1 181 26.5 45.6 | Symbols: | reverse transcriptase, putative / RNA-dependent DNA polymerase, putative | chr4:14333528-14335255 FORWARD
soybean_pep Glyma04g39800.2 190 28.9 45.3  
Medicago_pep IMGA|Medtr2g117110.1 430 34.9 52.0 RNA-directed DNA polymerase (Reverse transcriptase); Hemopexin; Polynucleotidyl transferase, Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3 27457173-27452820 H EGN_Mt090430 20090702
grape_pep GSVIVT01004252001 95.9 24.2 43.0  
castor_bean_cds --No_Hits--        
castor_bean_pep 30068.m002537 203 28.8 44.1 conserved hypothetical protein
JAT_13201ests gi|268520299|gb|FM890147.1|FM890147 180 88.3 88.3 FM890147 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003948, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0000015.50 length: 943 aa.
IPR000477 RNA-directed DNA polymerase (reverse transcriptase)
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0003964 RNA-directed DNA polymerase activity    
Biological Process GO:0006278 RNA-dependent DNA replication    
HMMPfam PF00078 RVT_1 3.4e-13 216-341
IPR012337 Polynucleotidyl transferase, ribonuclease H fold
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 5.9e-07 813-940
IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related
HMMPanther PTHR19446 REVERSE 3.4e-134 1-736
no_ID  
HMMPanther PTHR19446:SF34 NON-LTR 3.4e-134 1-736
Seg seg seg NA 492-501