Jatropha Genome Database

JcCB0982161.10 (JcS_103923.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0982161
Scaffold:
JcS_103923 JcCB0108161(+) =JcCB0615281(-) =JcCB0982161(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9R7R3_RICCO 294 98.5 98.5 (tr|B9R7R3) Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1593850 PE=4 SV=1
Arabidopsis_pep AT5G66730.1 270 88.7 95.5 | Symbols: | zinc finger (C2H2 type) family protein | chr5:26641914-26643883 REVERSE
soybean_pep Glyma04g03560.1 275 92.5 96.2  
Medicago_pep IMGA|Medtr8g093600.1 270 89.5 96.2 Zinc finger, C2H2-type chr08_pseudomolecule_IMGAG_V3 20629417-20632618 F EGN_Mt090430 20090702
grape_pep GSVIVT01009680001 282 94.0 97.7  
castor_bean_cds 30170.m014220 367 86.6 86.6 nucleic acid binding protein, putative
castor_bean_pep 30170.m014220 294 98.5 98.5 nucleic acid binding protein, putative
JAT_13201ests gi|268522602|gb|FM896643.1|FM896643 52.0 89.1 89.1 FM896643 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003913, mRNA sequence
KJC_r1 KJC_c05837 718 99.0 99.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0982161.10 length: 135 aa.
IPR007087 Zinc finger, C2H2-type
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 23-43
ProfileScan PS50157 ZINC_FINGER_C2H2_2 10.949 21-43
IPR015880 Zinc finger, C2H2-like
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00355 no description 77 21-43
62-92
97-117
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 1.6e-11 60-127
HMMPanther PTHR10593:SF10 UNCHARACTERIZED 1.6e-11 60-127
HMMPfam PF12171 zf-C2H2_jaz 1.1e-05 20-43
superfamily SSF57667 C2H2 3.9e-05 79-123
20-45