Jatropha Genome Database

JcCB0822121.10 (JcS_200117.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0822121
Scaffold:
JcS_200117 JcCD0162764(+) =JcCA0060881(+) =JcCB0011781(-) =JcCD0153828(+) =JcCB0822121(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RJH6_RICCO 202 53.5 56.6 (tr|B9RJH6) DNA binding protein, putative OS=Ricinus communis GN=RCOM_1034530 PE=4 SV=1
Arabidopsis_pep AT1G22190.1 117 88.7 90.3 | Symbols: | AP2 domain-containing transcription factor, putative | chr1:7836245-7837030 FORWARD
soybean_pep Glyma06g11010.1 157 46.2 50.2  
Medicago_pep IMGA|Medtr5g071740.1 141 66.7 67.6 Pathogenesis-related transcriptional factor and ERF chr05_pseudomolecule_IMGAG_V3 25453288-25455782 E EGN_Mt090430 20090702
grape_pep GSVIVT01002262001 149 63.1 67.2  
castor_bean_cds 29908.m006005 218 88.3 88.3 DNA binding protein, putative
castor_bean_pep 29908.m006005 202 53.5 56.6 DNA binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c00813 797 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0822121.10 length: 218 aa.
IPR001471 Pathogenesis-related transcriptional factor/ERF, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 1.6e-11 178-189
200-216
Gene3D G3DSA:3.30.730.10 no description 3.8e-16 176-218
HMMPfam PF00847 AP2 6.9e-15 178-218
HMMSmart SM00380 no description 4.1e-17 177-218
ProfileScan PS51032 AP2_ERF 19.599 177-218
IPR016177 DNA-binding, integrase-type
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 6.1e-17 176-218
no_ID  
Seg seg seg NA 32-59
63-78
125-154