Jatropha Genome Database

JcCB0779901.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0779901
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9I6H3_POPTR 205 84.2 87.7 (tr|B9I6H3) Predicted protein OS=Populus trichocarpa GN=MYB047 PE=4 SV=1
Arabidopsis_pep AT4G28110.1 198 80.7 86.0 | Symbols: AtMYB41 | AtMYB41 (myb domain protein 41); DNA binding / transcription factor | chr4:13968166-13969384 REVERSE
soybean_pep Glyma13g32090.1 198 82.5 86.0  
Medicago_pep IMGA|Medtr1g074140.1 193 79.8 84.2 Ribose 5-phosphate isomerase; Homeodomain-like; chr01_pseudomolecule_IMGAG_V3 14953614-14956280 E EGN_Mt090430 20090702
grape_pep GSVIVT01000460001 204 85.1 87.7  
castor_bean_cds 29983.m003281 293 89.9 89.9 r2r3-myb transcription factor, putative
castor_bean_pep 29983.m003281 204 83.3 87.7 r2r3-myb transcription factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0779901.10 length: 114 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 3.2 13-63
66-114
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 9e-23 14-83
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 3.3e-05 12-64
68-114
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 1e-08 14-61
67-114
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 6.8e-77 3-114
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 8.267 9-65
66-114
no_ID  
HMMPanther PTHR10641:SF30 R2R3-MYB 6.8e-77 3-114
Seg seg seg NA 90-95