Jatropha Genome Database

JcCB0467821.10 (JcS_201899.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0467821
Scaffold:
JcS_201899 JcCB0291291(+) =JcCB0467821(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9SLD2_RICCO 640 94.5 96.6 (tr|B9SLD2) Carbamoyl-phosphate synthase small chain, putative OS=Ricinus communis GN=RCOM_0685090 PE=3 SV=1
Arabidopsis_pep AT3G27740.1 583 84.5 92.2 | Symbols: CARA | CARA (CARBAMOYL PHOSPHATE SYNTHETASE A); carbamoyl-phosphate synthase (glutamine-hydrolyzing)/ carbamoyl-phosphate synthase/ catalytic | chr3:10281470-10283792 REVERSE
soybean_pep Glyma05g32190.1 604 85.6 91.6  
Medicago_pep IMGA|Medtr8g109600.1 591 82.9 90.4 Carbamoyl-phosphate synthase, small subunit; Glutamine amidotransferase, class I, active site chr08_pseudomolecule_IMGAG_V3 24622665-24629470 E EGN_Mt090430 20090702
grape_pep GSVIVT01026584001 620 91.3 95.0  
castor_bean_cds 29728.m000797 1108 89.5 89.5 Carbamoyl-phosphate synthase small chain, putative
castor_bean_pep 29728.m000797 640 94.5 96.6 Carbamoyl-phosphate synthase small chain, putative
JAT_13201ests gi|268521959|gb|FM892799.1|FM892799 468 98.8 98.8 FM892799 Jatropha curcas embryo 56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003449, mRNA sequence
KJC_r1 KJC_c09021 1102 99.3 99.3  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0467821.10 length: 395 aa.
IPR000991 Glutamine amidotransferase class-I, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
HMMPfam PF00117 GATase 1.1e-44 186-353
IPR001317 Carbamoyl phosphate synthase, GATase domain
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0006541 glutamine metabolic process    
FPrintScan PR00099 CPSGATASE 3.5e-37 183-197
222-236
252-268
269-286
294-305
IPR002474 Carbamoyl phosphate synthase, small subunit, N-terminal
Molecular Function GO:0004086 carbamoyl-phosphate synthase activity    
Biological Process GO:0006807 nitrogen compound metabolic process    
HMMPfam PF00988 CPSase_sm_chain 2.9e-34 32-125
superfamily SSF52021 Carbamoyl 3.7e-36 32-145
IPR006220 Anthranilate synthase component II/delta crystallin
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0009058 biosynthetic process    
FPrintScan PR00097 ANTSNTHASEII 2.5e-06 225-234
252-263
337-350
IPR006274 Carbamoyl phosphate synthase, small subunit
Molecular Function GO:0004086 carbamoyl-phosphate synthase activity    
Biological Process GO:0006807 nitrogen compound metabolic process    
HMMPanther PTHR11405:SF4 CARBAMOYL-PHOSPHATE 1.6e-162 32-353
HMMTigr TIGR01368 CPSaseIIsmall: 8.2e-182 32-355
IPR011702 Glutamine amidotransferase superfamily
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0006541 glutamine metabolic process    
FPrintScan PR00096 GATASE 1e-11 225-234
252-263
337-350
IPR017926 Glutamine amidotransferase type 1
ProfileScan PS51273 GATASE_TYPE_1 26.894 182-371
no_ID  
Gene3D G3DSA:3.40.50.880 no description 8.9e-66 144-368
Gene3D G3DSA:3.50.30.20 no description 8e-33 32-144
HMMPanther PTHR11405 CARBAMOYLTRANSFERASE 1.6e-162 32-353
superfamily SSF52317 Class 8.9e-59 142-368