Jatropha Genome Database

JcCB0389821.10 (JcS_102136.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0389821
Scaffold:
JcS_102136 JcCB0262451(+) =JcCA0301911(+) =JcCB0194531(-) =JcCB0389821(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9T4M7_RICCO 664 78.3 86.3 (tr|B9T4M7) Two-component sensor histidine kinase bacteria, putative OS=Ricinus communis GN=RCOM_0053570 PE=4 SV=1
Arabidopsis_pep AT3G16857.2 182 59.4 77.4 | Symbols: ARR1 | ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1); transcription factor/ two-component response regulator | chr3:5756113-5759139 FORWARD
soybean_pep Glyma07g26890.1 427 55.0 69.5  
Medicago_pep IMGA|Medtr3g138060.1 127 77.0 91.9 Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related chr03_pseudomolecule_IMGAG_V3 35178774-35183412 F EGN_Mt090430 20090702
grape_pep GSVIVT01011650001 409 82.6 88.7  
castor_bean_cds 27647.m000179 932 86.2 86.2 two-component sensor histidine kinase bacteria, putative
castor_bean_pep 27647.m000179 664 78.3 86.3 two-component sensor histidine kinase bacteria, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c04501 1098 99.1 99.1  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0389821.10 length: 436 aa.
IPR006447 Myb-like DNA-binding domain, SHAQKYF class
method AccNumber shortName E-value location
HMMTigr TIGR01557 myb_SHAQKYF: 5.2e-31 39-94
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 1.1e-20 35-98
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 2.5e-23 35-98
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 8.3e-11 41-91
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 11.209 36-95
no_ID  
Seg seg seg NA 248-255