Jatropha Genome Database

JcCB0317401.10 (JcS_104355.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0317401
Scaffold:
JcS_104355 JcCB0262511(-) =JcCB0317401(+) =JcCA0302891(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl D7SSE7_VITVI 111 57.9 76.8 (tr|D7SSE7) Whole genome shotgun sequence of line PN40024, scaffold_147.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00000981001 PE=4 SV=1
Arabidopsis_pep AT4G18590.1 102 53.7 72.6 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor A protein 3 (InterPro:IPR013970), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52630.2); Has 58 Blast hits to 58 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:10236524-10236940 FORWARD
soybean_pep Glyma20g24590.1 105 58.6 77.0  
Medicago_pep IMGA|Medtr7g127630.1 79.3 46.1 64.0 Replication factor A protein 3 chr07_pseudomolecule_IMGAG_V3 29974890-29972198 E EGN_Mt090430 20090702
grape_pep GSVIVT01000981001 111 57.9 76.8  
castor_bean_cds --No_Hits--        
castor_bean_pep 28629.m000552 103 54.0 75.9 conserved hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0317401.10 length: 112 aa.
IPR013970 Replication factor A protein 3
method AccNumber shortName E-value location
HMMPfam PF08661 Rep_fac-A_3 2.9e-16 1-92
IPR016027 Nucleic acid-binding, OB-fold-like
superfamily SSF50249 Nucleic 2.1e-10 3-84