Jatropha Genome Database

JcCB0305381.10 (JcS_202037.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0305381
Scaffold:
JcS_202037 JcCB0415641(+) =JcCB0305381(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl D7U4X6_VITVI 244 61.0 74.4 (tr|D7U4X6) Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00023936001 PE=4 SV=1
Arabidopsis_pep AT2G17120.1 201 53.4 67.4 | Symbols: LYM2 | LYM2 (LYSM DOMAIN GPI-ANCHORED PROTEIN 2 PRECURSOR) | chr2:7459156-7460648 FORWARD
soybean_pep Glyma05g26420.1 179 46.9 63.3  
Medicago_pep IMGA|AC235671_7.3 201 52.3 63.5 Peptidoglycan-binding LysM AC235671.2 31615-27432 E EGN_Mt090430 20090702
grape_pep GSVIVT01023936001 244 61.0 74.4  
castor_bean_cds --No_Hits--        
castor_bean_pep 30122.m000356 241 56.2 70.8 LysM domain GPI-anchored protein 2 precursor, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0305381.10 length: 239 aa.
IPR002482 Peptidoglycan-binding Lysin subgroup
method AccNumber shortName E-value location
Biological Process GO:0016998 cell wall macromolecule catabolic process    
HMMSmart SM00257 no description 9.2e-10 108-155
172-216
IPR018392 Peptidoglycan-binding lysin domain
Biological Process GO:0016998 cell wall macromolecule catabolic process    
HMMPfam PF01476 LysM 4e-07 109-155
173-216
no_ID  
Seg seg seg NA 11-23
220-234
superfamily SSF54106 LysM 9.2e-07 169-218
105-157