Jatropha Genome Database

JcCB0290191.10 (JcS_101743.20)

Related links:

GeneModel

Predicted Sequence Links:

Genome Sequence: JcCB0290191

Full length sequence(2951 bp)
Sequence Cut

Init: Term:
reverse complement

Scaffold:

JcS_101743

JcCA0290151(+) =JcCB0290191(-) =JcCB0290151(+) =JcCB0169271(-)

Results of Blast2 searches (The best-hits are tabulated.):

database	Accession	Score	Iden (%)	Posi (%)	Definition
trembl	B9HVN7_POPTR	285	82.6	83.8	(tr\|B9HVN7) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_566362 PE=4 SV=1
Arabidopsis_pep	AT2G02080.1	266	81.8	86.5	\| Symbols: AtIDD4 \| AtIDD4 (Arabidopsis thaliana Indeterminate(ID)-Domain 4); transcription factor \| chr2:518328-521170 REVERSE
soybean_pep	Glyma20g24370.1	268	82.4	86.3
Medicago_pep	IMGA\|Medtr1g039670.1	250	80.3	83.7	Zinc finger, C2H2-type chr01_pseudomolecule_IMGAG_V3 9107055-9112031 E EGN_Mt090430 20090702
grape_pep	GSVIVT01010283001	265	71.7	76.6
castor_bean_cds	29780.m001362	458	91.8	91.8	nucleic acid binding protein, putative
castor_bean_pep	29780.m001361	268	70.5	72.5	zinc finger protein, putative
JAT_13201ests	--No_Hits--
KJC_r1	KJC_c12118	565	96.7	96.7

A list of protein families, domains and functional sites (searches in InterPro)

IPR007087	Zinc finger, C2H2-type
JcCB0290191.10				length: 162 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0005622	intracellular
Molecular Function	GO:0008270	zinc ion binding
PatternScan	PS00028	ZINC_FINGER_C2H2_1	NA	51-71
ProfileScan	PS50157	ZINC_FINGER_C2H2_2	10.990	49-71
IPR015880	Zinc finger, C2H2-like
Cellular Component	GO:0005622	intracellular
Molecular Function	GO:0008270	zinc ion binding
HMMSmart	SM00355	no description	1.3e+02	49-71 90-120 125-145
no_ID
HMMPanther	PTHR10593	SERINE/THREONINE-PROTEIN	3.2e-09	88-155
HMMPanther	PTHR10593:SF10	UNCHARACTERIZED	3.2e-09	88-155
HMMPfam	PF12171	zf-C2H2_jaz	2e-05	48-71
Seg	seg	seg	NA	2-8 17-26
superfamily	SSF57667	C2H2	1.4e-05	41-76 107-151