Jatropha Genome Database

JcCB0288671.10 (JcS_109377.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0288671
Scaffold:
JcS_109377 JcCB0288671(-) =JcCB0433251(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9GU16_POPTR 293 75.0 77.6 (tr|B9GU16) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_816262 PE=4 SV=1
Arabidopsis_pep AT1G77470.1 266 70.9 75.0 | Symbols: | replication factor C 36 kDA, putative | chr1:29112194-29114323 REVERSE
soybean_pep Glyma06g11980.1 271 77.8 81.3  
Medicago_pep IMGA|Medtr3g100750.1 265 77.3 79.7 AAA ATPase, central region chr03_pseudomolecule_IMGAG_V3 24245152-24251862 F EGN_Mt090430 20090702
grape_pep GSVIVT01008841001 287 74.5 77.0  
castor_bean_cds 29648.m002014 531 88.1 88.1 replication factor C / DNA polymerase III gamma-tau subunit, putative
castor_bean_pep 29648.m002014 282 74.0 76.0 replication factor C / DNA polymerase III gamma-tau subunit, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0288671.10 length: 252 aa.
IPR003593 ATPase, AAA+ type, core
method AccNumber shortName E-value location
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 no description 1.6e-11 76-206
IPR003959 ATPase, AAA-type, core
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00004 AAA 5e-17 80-197
no_ID  
Gene3D G3DSA:3.40.50.300 no description 3.2e-52 43-198
HMMPanther PTHR11669 REPLICATION 1.4e-21 117-200
Seg seg seg NA 129-151
222-234
superfamily SSF52540 P-loop 1.3e-40 55-200