Jatropha Genome Database

JcCB0270961.10 (JcS_100567.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0270961
Scaffold:
JcS_100567 JcCB0279151(-) =JcCB0417211(-) =JcCB0270961(-) =JcCB0480671(-) =JcCB0304081(+) =JcCB0892171(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9I3T7_POPTR 156 85.1 90.8 (tr|B9I3T7) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_891651 PE=3 SV=1
Arabidopsis_pep AT4G11880.1 113 64.3 81.0 | Symbols: AGL14 | AGL14 (agamous-like 14); DNA binding / transcription factor | chr4:7143512-7147108 FORWARD
soybean_pep Glyma09g40230.2 112 74.3 84.3  
Medicago_pep IMGA|Medtr3g013050.1 107 67.1 87.1 Transcription factor, MADS-box; Transcription factor, K-box chr03_pseudomolecule_IMGAG_V3 2348300-2341992 E EGN_Mt090430 20090702
grape_pep GSVIVT01008560001 154 84.1 94.3  
castor_bean_cds 30170.m013776 65.9 83.5 83.5 mads box protein, putative
castor_bean_pep 30147.m014133 107 61.7 80.2 mads box protein, putative
JAT_13201ests gi|262091321|gb|GT228748.1|GT228748 52.0 90.5 90.5 JC313 Jatropha seeds from fruits at three stages of maturation Jatropha curcas cDNA clone PL06SE.E07.scf 5', mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0270961.10 length: 90 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
FPrintScan PR00404 MADSDOMAIN 7.7e-31 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 3.6e-27 9-59
HMMSmart SM00432 no description 2.9e-41 1-60
ProfileScan PS50066 MADS_BOX_2 32.057 1-61
superfamily SSF55455 SRF-like 1.6e-30 1-84
no_ID  
HMMPanther PTHR11945 MADS 4e-44 10-70
HMMPanther PTHR11945:SF19 MADS 4e-44 10-70