Jatropha Genome Database

JcCB0244421.10 (JcS_109116.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0244421
Scaffold:
JcS_109116 JcCB0244421(+) =JcCB0543691(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9T293_RICCO 159 65.9 72.4 (tr|B9T293) Ethylene-responsive transcription factor 1B, putative (Fragment) OS=Ricinus communis GN=RCOM_0463380 PE=4 SV=1
Arabidopsis_pep AT3G23240.1 135 54.5 63.4 | Symbols: ERF1, ATERF1 | ERF1 (ETHYLENE RESPONSE FACTOR 1); DNA binding / transcription activator/ transcription factor | chr3:8295705-8296361 FORWARD
soybean_pep Glyma10g33060.1 131 60.2 70.8  
Medicago_pep IMGA|Medtr1g042600.1 121 49.6 60.6 Pathogenesis-related transcriptional factor and ERF chr01_pseudomolecule_IMGAG_V3 9827732-9828482 E EGN_Mt090430 20090702
grape_pep GSVIVT01028315001 141 56.5 66.4  
castor_bean_cds 29584.m000234 115 82.0 82.0 Ethylene-responsive transcription factor 1B, putative
castor_bean_pep 29584.m000234 159 65.9 72.4 Ethylene-responsive transcription factor 1B, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c06864 438 99.6 99.6  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0244421.10 length: 225 aa.
IPR001471 Pathogenesis-related transcriptional factor/ERF, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 4.1e-10 86-97
109-125
Gene3D G3DSA:3.30.730.10 no description 2e-23 84-146
HMMPfam PF00847 AP2 1.5e-15 85-135
HMMSmart SM00380 no description 2.7e-37 85-149
ProfileScan PS51032 AP2_ERF 22.774 85-143
IPR016177 DNA-binding, integrase-type
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 6.3e-24 84-146
no_ID  
Seg seg seg NA 13-24
28-44
54-67
119-130
169-185
204-220