Jatropha Genome Database

JcCB0240171.10 (JcS_201847.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0240171
Scaffold:
JcS_201847 JcCB0240171(+) =JcCB0128051(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9HIK1_POPTR 310 66.3 71.5 (tr|B9HIK1) Predicted protein OS=Populus trichocarpa GN=MYB212 PE=4 SV=1
Arabidopsis_pep AT3G06490.1 253 90.0 97.9 | Symbols: MYB108, AtMYB108, BOS1 | MYB108 (myb domain protein 108); DNA binding / transcription factor | chr3:2004298-2006358 FORWARD
soybean_pep Glyma17g04170.1 252 66.2 72.1  
Medicago_pep IMGA|Medtr2g037450.1 248 91.9 95.6 Homeodomain-related; chr02_pseudomolecule_IMGAG_V3 10191584-10193683 F EGN_Mt090430 20090702
grape_pep GSVIVT01034943001 261 67.3 69.2  
castor_bean_cds 29889.m003351 147 87.5 87.5 r2r3-myb transcription factor, putative
castor_bean_pep 30076.m004607 241 85.6 92.1 r2r3-myb transcription factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c11167 702 98.3 98.3  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0240171.10 length: 241 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 2.6e-14 35-85
88-136
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 2.1e-09 36-106
95-145
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 1e-15 34-86
90-138
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 2e-13 36-83
89-132
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 4.5e-85 34-170
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 15.619 84-138
31-83
no_ID  
HMMPanther PTHR10641:SF30 R2R3-MYB 4.5e-85 34-170
Seg seg seg NA 13-27
168-190
226-235