Jatropha Genome Database

JcCB0236181.10 (JcS_201840.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0236181
Scaffold:
JcS_201840 JcCB0236181(+) =JcCB0850261(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9SZX0_RICCO 276 73.1 80.7 (tr|B9SZX0) Ethylene-responsive transcription factor 1B, putative OS=Ricinus communis GN=RCOM_1007740 PE=4 SV=1
Arabidopsis_pep AT3G23240.1 212 57.1 71.2 | Symbols: ERF1, ATERF1 | ERF1 (ETHYLENE RESPONSE FACTOR 1); DNA binding / transcription activator/ transcription factor | chr3:8295705-8296361 FORWARD
soybean_pep Glyma20g34570.1 208 57.1 69.6  
Medicago_pep IMGA|Medtr1g042600.1 198 56.8 66.3 Pathogenesis-related transcriptional factor and ERF chr01_pseudomolecule_IMGAG_V3 9827732-9828482 E EGN_Mt090430 20090702
grape_pep GSVIVT01028315001 179 57.3 74.4  
castor_bean_cds 29895.m000321 327 82.6 82.6 Ethylene-responsive transcription factor 1B, putative
castor_bean_pep 29895.m000321 276 73.1 80.7 Ethylene-responsive transcription factor 1B, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c10582 1118 98.4 98.4  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0236181.10 length: 249 aa.
IPR001471 Pathogenesis-related transcriptional factor/ERF, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 1.7e-09 118-129
141-157
Gene3D G3DSA:3.30.730.10 no description 6.6e-23 116-178
HMMPfam PF00847 AP2 1.2e-14 117-168
HMMSmart SM00380 no description 7.9e-35 117-181
ProfileScan PS51032 AP2_ERF 22.629 117-175
IPR016177 DNA-binding, integrase-type
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 4.9e-23 116-178
no_ID  
Seg seg seg NA 36-60
151-162