Jatropha Genome Database

JcCB0212191.10 (JcS_105426.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0212191
Scaffold:
JcS_105426 JcCB0704721(+) =JcCB0340981(+) =JcCB0212191(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl A9PE07_POPTR 150 81.4 94.2 (tr|A9PE07) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_680539 PE=4 SV=1
Arabidopsis_pep AT4G18590.1 111 60.2 80.7 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor A protein 3 (InterPro:IPR013970), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52630.2); Has 58 Blast hits to 58 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:10236524-10236940 FORWARD
soybean_pep Glyma10g42530.1 102 59.3 69.8  
Medicago_pep IMGA|Medtr7g127630.1 105 58.4 77.5 Replication factor A protein 3 chr07_pseudomolecule_IMGAG_V3 29974890-29972198 E EGN_Mt090430 20090702
grape_pep GSVIVT01033859001 119 65.1 84.9  
castor_bean_cds 28629.m000552 105 80.4 80.4 conserved hypothetical protein
castor_bean_pep 28629.m000552 149 80.5 95.4 conserved hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0212191.10 length: 109 aa.
IPR013970 Replication factor A protein 3
method AccNumber shortName E-value location
HMMPfam PF08661 Rep_fac-A_3 3.7e-15 1-86
IPR016027 Nucleic acid-binding, OB-fold-like
superfamily SSF50249 Nucleic 1.6e-10 3-84