Jatropha Genome Database

JcCB0206681.10 (JcS_100335.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0206681
Scaffold:
JcS_100335 JcCB0646291(+) =JcCB0206681(-) =JcCA0116061(-) =JcCB0366241(-) =JcCB0600381(+) =JcCB0005331(+) =JcCB0571341(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9R9J1_RICCO 113 85.9 90.6 (tr|B9R9J1) Mads box protein, putative OS=Ricinus communis GN=RCOM_1497850 PE=3 SV=1
Arabidopsis_pep AT5G62165.3 100 73.4 87.5 | Symbols: AGL42 | AGL42 (AGAMOUS LIKE 42); transcription factor | chr5:24965075-24968437 FORWARD
soybean_pep Glyma05g03660.2 101 79.0 87.1  
Medicago_pep IMGA|Medtr7g083460.1 98.2 81.0 89.7 Transcription factor, MADS-box chr07_pseudomolecule_IMGAG_V3 17829732-17826840 E EGN_Mt090430 20090702
grape_pep GSVIVT01027579001 95.5 77.6 87.9  
castor_bean_cds 30147.m014133 165 88.4 88.4 mads box protein, putative
castor_bean_pep 30147.m014133 113 85.9 90.6 mads box protein, putative
JAT_13201ests gi|262091321|gb|GT228748.1|GT228748 60.0 91.3 91.3 JC313 Jatropha seeds from fruits at three stages of maturation Jatropha curcas cDNA clone PL06SE.E07.scf 5', mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0206681.10 length: 93 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
FPrintScan PR00404 MADSDOMAIN 8.4e-30 28-48
48-63
63-84
HMMPfam PF00319 SRF-TF 2e-26 34-84
HMMSmart SM00432 no description 2.5e-36 26-85
PatternScan PS00350 MADS_BOX_1 NA 28-82
ProfileScan PS50066 MADS_BOX_2 29.969 26-86
superfamily SSF55455 SRF-like 2.8e-24 27-86
no_ID  
HMMPanther PTHR11945 MADS 2.2e-37 35-84
HMMPanther PTHR11945:SF19 MADS 2.2e-37 35-84