Jatropha Genome Database

JcCB0198891.10 (JcS_102068.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0198891
Scaffold:
JcS_102068 JcCB0198891(+) =JcCB0227741(-) =JcCA0134961(+) =JcCB0234781(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SLS5_RICCO 409 86.9 92.6 (tr|B9SLS5) Succinate dehydrogenase, putative OS=Ricinus communis GN=RCOM_0530950 PE=4 SV=1
Arabidopsis_pep AT5G40650.1 377 79.0 85.6 | Symbols: SDH2-2 | SDH2-2; electron carrier/ succinate dehydrogenase | chr5:16281462-16283296 FORWARD
soybean_pep Glyma16g07150.1 384 81.4 88.3  
Medicago_pep --No_Hits--        
grape_pep GSVIVT01003975001 293 94.5 96.6  
castor_bean_cds 29633.m000905 341 82.4 82.4 succinate dehydrogenase, putative
castor_bean_pep 29633.m000905 409 86.9 92.6 succinate dehydrogenase, putative
JAT_13201ests gi|268525209|gb|FM895851.1|FM895851 519 100.0 100.0 FM895851 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002847, mRNA sequence
KJC_r1 KJC_c01652 932 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0198891.10 length: 232 aa.
IPR001041 Ferredoxin
method AccNumber shortName E-value location
Molecular Function GO:0009055 electron carrier activity    
Molecular Function GO:0051536 iron-sulfur cluster binding    
ProfileScan PS51085 2FE2S_FER_2 9.513 53-141
superfamily SSF54292 2Fe-2S 8.4e-34 46-150
IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein
Biological Process GO:0006099 tricarboxylic acid cycle    
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation reduction    
HMMTigr TIGR00384 dhsB: 2.5e-47 55-232
IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site
Molecular Function GO:0009055 electron carrier activity    
PatternScan PS00197 2FE2S_FER_1 NA 103-111
IPR009051 Alpha-helical ferredoxin
Molecular Function GO:0016491 oxidoreductase activity    
Molecular Function GO:0051536 iron-sulfur cluster binding    
Biological Process GO:0055114 oxidation reduction    
superfamily SSF46548 alpha-helical 5.7e-30 151-227
IPR012285 Fumarate reductase, C-terminal
Molecular Function GO:0016491 oxidoreductase activity    
Molecular Function GO:0051536 iron-sulfur cluster binding    
Gene3D G3DSA:1.10.1060.10 no description 5.6e-23 151-227
IPR012675 Beta-grasp fold, ferredoxin-type
Gene3D G3DSA:3.10.20.30 no description 6.6e-35 47-150
IPR017896 4Fe-4S ferredoxin, iron-sulpur binding domain
ProfileScan PS51379 4FE4S_FER_2 7.895 184-214
IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
Molecular Function GO:0009055 electron carrier activity    
Molecular Function GO:0051536 iron-sulfur cluster binding    
PatternScan PS00198 4FE4S_FER_1 NA 194-205
no_ID  
HMMPanther PTHR11921 SUCCINATE 2.2e-106 64-227