Jatropha Genome Database

JcCB0189931.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0189931
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl C6T742_SOYBN 125 98.4 98.4 (tr|C6T742) Putative uncharacterized protein OS=Glycine max PE=2 SV=1
Arabidopsis_pep AT1G24260.1 120 96.7 96.7 | Symbols: SEP3, AGL9 | SEP3 (SEPALLATA3); DNA binding / protein binding / transcription factor | chr1:8593790-8595862 REVERSE
soybean_pep Glyma17g08860.1 121 98.4 98.4  
Medicago_pep IMGA|Medtr3g104190.1 120 95.1 96.7 Transcription factor, MADS-box; Transcription factor, K-box chr03_pseudomolecule_IMGAG_V3 25812647-25808917 E EGN_Mt090430 20090702
grape_pep GSVIVT01010521001 120 96.7 96.7  
castor_bean_cds 30174.m008934 109 83.2 83.2 mads box protein, putative
castor_bean_pep 30174.m008934 114 93.2 98.3 mads box protein, putative
JAT_13201ests gi|262091321|gb|GT228748.1|GT228748 117 83.8 83.8 JC313 Jatropha seeds from fruits at three stages of maturation Jatropha curcas cDNA clone PL06SE.E07.scf 5', mRNA sequence
KJC_r1 KJC_c11682 54.0 94.9 94.9  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0189931.10 length: 108 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
FPrintScan PR00404 MADSDOMAIN 1.6e-33 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 4.3e-30 9-59
HMMSmart SM00432 no description 5.1e-40 1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
ProfileScan PS50066 MADS_BOX_2 33.529 1-61
superfamily SSF55455 SRF-like 1.9e-28 1-84
no_ID  
HMMPanther PTHR11945 MADS 3.2e-44 10-63
HMMPanther PTHR11945:SF19 MADS 3.2e-44 10-63
Seg seg seg NA 65-76