Jatropha Genome Database

JcCB0185341.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0185341
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9HKG6_POPTR 320 60.9 72.1 (tr|B9HKG6) Predicted protein OS=Populus trichocarpa GN=MYB185 PE=4 SV=1
Arabidopsis_pep AT3G23250.1 259 52.5 65.1 | Symbols: MYB15, ATY19, ATMYB15 | MYB15 (MYB DOMAIN PROTEIN 15); DNA binding / transcription factor | chr3:8309492-8310624 FORWARD
soybean_pep Glyma20g35180.1 276 55.1 66.3  
Medicago_pep IMGA|Medtr1g042810.1 251 53.1 61.5 Homeodomain-like; chr01_pseudomolecule_IMGAG_V3 9940923-9942895 F EGN_Mt090430 20090702
grape_pep GSVIVT01027811001 260 53.5 72.5  
castor_bean_cds 29680.m001686 113 82.2 82.2 r2r3-myb transcription factor, putative
castor_bean_pep 30174.m009001 206 76.7 91.4 r2r3-myb transcription factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0185341.10 length: 254 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 1.1e-14 13-63
66-114
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 6.6e-11 14-84
73-123
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 1.5e-17 12-64
68-116
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 2.3e-14 14-61
67-112
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 6.3e-101 3-201
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 15.402 62-116
9-61
no_ID  
HMMPanther PTHR10641:SF30 R2R3-MYB 6.3e-101 3-201