Jatropha Genome Database

JcCB0176301.20 (JcS_201761.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0176301
Scaffold:
JcS_201761 JcCB0176301(+) =JcCD0139690(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SGR7_RICCO 205 96.9 99.0 (tr|B9SGR7) Ccaat-binding transcription factor subunit A, putative OS=Ricinus communis GN=RCOM_0819660 PE=4 SV=1
Arabidopsis_pep AT2G38880.3 186 86.6 94.8 | Symbols: NF-YB1 | NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1); transcription factor | chr2:16238685-16240225 FORWARD
soybean_pep Glyma19g36220.1 198 96.8 98.9  
Medicago_pep IMGA|Medtr7g068360.1 196 95.8 98.9 Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; Transcription factor CBF/NF-Y/archaeal histone chr07_pseudomolecule_IMGAG_V3 13992380-13994623 E EGN_Mt090430 20090702
grape_pep GSVIVT01016347001 190 93.5 97.8  
castor_bean_cds 29805.m001490 345 89.2 89.2 ccaat-binding transcription factor subunit A, putative
castor_bean_pep 29805.m001490 205 96.9 99.0 ccaat-binding transcription factor subunit A, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c05967 194 85.0 85.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0176301.20 length: 136 aa.
IPR003956 Transcription factor, NFYB/HAP3, conserved site
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
PatternScan PS00685 NFYB_HAP3 NA 65-81
IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase
Molecular Function GO:0003677 DNA binding    
FPrintScan PR00615 CCAATSUBUNTA 6.5e-21 62-80
81-99
100-118
HMMPanther PTHR11064:SF9 CCAAT-BINDING 1.7e-68 16-119
IPR003958 Transcription factor CBF/NF-Y/archaeal histone
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMPfam PF00808 CBFD_NFYB_HMF 1.6e-28 34-98
IPR009072 Histone-fold
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.20.10 no description 1.6e-39 20-120
superfamily SSF47113 Histone-fold 3.4e-36 31-120
no_ID  
HMMPanther PTHR11064 CCAAT-BINDING 1.7e-68 16-119
Seg seg seg NA 4-22