Jatropha Genome Database

JcCB0136181.30 (JcS_108503.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0136181
Scaffold:
JcS_108503 JcCB0136181(+) =JcCB0685221(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9GIZ9_POPTR 181 43.0 55.7 (tr|B9GIZ9) Predicted protein OS=Populus trichocarpa GN=MYB188 PE=4 SV=1
Arabidopsis_pep AT5G14340.1 156 74.5 87.2 | Symbols: AtMYB40 | AtMYB40 (myb domain protein 40); DNA binding / transcription factor | chr5:4623367-4624779 FORWARD
soybean_pep Glyma16g06900.1 165 79.8 87.2  
Medicago_pep IMGA|Medtr5g085860.1 152 73.1 82.8 Homeodomain-related; chr05_pseudomolecule_IMGAG_V3 32875577-32877860 E EGN_Mt090430 20090702
grape_pep GSVIVT01003966001 167 79.8 90.4  
castor_bean_cds 29929.m004749 276 89.3 89.3 r2r3-myb transcription factor, putative
castor_bean_pep 29929.m004749 174 86.2 91.5 r2r3-myb transcription factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0136181.30 length: 183 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 2.5e-15 31-79
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 3.8e-05 28-81
2-37
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 3e-16 2-29
33-81
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 1.1e-14 32-75
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 2e-60 4-181
IPR017877 MYB-like
ProfileScan PS50090 MYB_LIKE 5.819 1-26
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 26.858 27-81
no_ID  
Coil coil coiled-coil NA 94-115
HMMPanther PTHR10641:SF30 R2R3-MYB 2e-60 4-181
Seg seg seg NA 96-107