Jatropha Genome Database

JcCB0135511.10 (JcS_100447.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0135511
Scaffold:
JcS_100447 JcCA0296741(-) =JcCB0115061(+) =JcCB0135511(+) =JcCA0307801(-) =JcCA0110991(+) =JcCB0044721(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl D7TQQ8_VITVI 325 68.8 74.9 (tr|D7TQQ8) Whole genome shotgun sequence of line PN40024, scaffold_40.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00025739001 PE=4 SV=1
Arabidopsis_pep AT5G03415.1 284 89.5 94.7 | Symbols: DPB, ATDPB | DPB; protein binding / protein heterodimerization | chr5:842842-845200 FORWARD
soybean_pep Glyma01g43800.1 319 78.5 82.0  
Medicago_pep IMGA|Medtr4g107200.1 298 74.1 79.1 Winged helix repressor DNA-binding; chr04_pseudomolecule_IMGAG_V3 23346768-23350809 E EGN_Mt090430 20090702
grape_pep GSVIVT01025739001 325 68.8 74.9  
castor_bean_cds 30078.m002288 622 90.0 90.0 Transcription factor Dp-1, putative
castor_bean_pep 30078.m002288 313 66.1 69.7 Transcription factor Dp-1, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0135511.10 length: 247 aa.
IPR003316 Transcription factor E2F/dimerisation partner (TDP)
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Cellular Component GO:0005667 transcription factor complex    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02319 E2F_TDP 3e-29 95-178
IPR011991 Winged helix-turn-helix transcription repressor DNA-binding
Gene3D G3DSA:1.10.10.10 no description 1.3e-36 89-185
IPR014889 Transcription factor DP, C-terminal
HMMPfam PF08781 DP 2.4e-23 185-247
IPR015648 Transcription factor DP
HMMPanther PTHR12548 DP 1.8e-121 62-247
no_ID  
Coil coil coiled-coil NA 187-229
HMMPanther PTHR12548:SF1 DP 1.8e-121 62-247
Seg seg seg NA 27-47
67-95
superfamily SSF46785 "Winged 2.2e-22 97-180