Jatropha Genome Database

JcCB0087171.10 (JcS_101371.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0087171
Scaffold:
JcS_101371 JcCB0764201(+) =JcCB0087171(-) =JcCA0301531(+) =JcCB0242111(+) =JcCB0335421(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9I3Y9_POPTR 728 80.2 85.1 (tr|B9I3Y9) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_834367 PE=4 SV=1
Arabidopsis_pep AT5G62000.3 708 76.3 82.3 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE FACTOR 2); protein binding / transcription factor | chr5:24910859-24914680 FORWARD
soybean_pep Glyma05g38540.2 704 78.4 83.5  
Medicago_pep IMGA|Medtr4g152210.1 692 76.2 82.2 AUX/IAA protein; Transcriptional factor B3; Auxin response factor chr04_pseudomolecule_IMGAG_V3 37661517-37656640 E EGN_Mt090430 20090702
grape_pep GSVIVT01008639001 727 81.1 84.6  
castor_bean_cds 30147.m014418 842 88.5 88.5 Auxin response factor, putative
castor_bean_pep 30147.m014418 667 76.8 81.1 Auxin response factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c00520 2064 99.3 99.3  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0087171.10 length: 450 aa.
IPR003340 Transcriptional factor B3
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02362 B3 1.8e-22 127-228
ProfileScan PS50863 B3 11.660 127-229
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0009725 response to hormone stimulus    
Biological Process GO:0045449 regulation of transcription    
HMMPfam PF06507 Auxin_resp 2.1e-36 253-335
no_ID  
Gene3D G3DSA:2.40.330.10 no description 5.1e-43 114-243
Seg seg seg NA 357-388