Jatropha Genome Database

JcCB0086731.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0086731
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9HE03_POPTR 238 63.0 75.0 (tr|B9HE03) Predicted protein OS=Populus trichocarpa GN=MYB133 PE=4 SV=1
Arabidopsis_pep AT5G57620.1 222 80.7 92.4 | Symbols: MYB36, AtMYB36 | MYB36 (myb domain protein 36); DNA binding / transcription factor | chr5:23334904-23336388 FORWARD
soybean_pep Glyma13g01200.1 221 76.5 87.1  
Medicago_pep IMGA|Medtr5g015140.1 219 61.8 74.2 Homeodomain-related; chr05_pseudomolecule_IMGAG_V3 4975372-4976865 F EGN_Mt090430 20090702
grape_pep GSVIVT01035332001 232 87.2 94.0  
castor_bean_cds 29912.m005344 129 88.9 88.9 r2r3-myb transcription factor, putative
castor_bean_pep 30169.m006322 178 60.0 78.5 r2r3-myb transcription factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0086731.10 length: 285 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 6.3e-13 13-64
67-115
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 2.2e-08 14-85
87-147
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 9.6e-16 12-65
69-117
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 6.1e-11 14-62
69-111
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 1.7e-82 3-282
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 15.966 9-66
67-117
no_ID  
HMMPanther PTHR10641:SF30 R2R3-MYB 1.7e-82 3-282
Seg seg seg NA 221-233