Jatropha Genome Database

JcCB0045901.20 (JcS_200794.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0045901
Scaffold:
JcS_200794 JcCB0045901(+) =JcCD0070323(+) =JcCB0143121(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9S581_RICCO 194 55.6 60.1 (tr|B9S581) Phytochrome-interacting factor, putative OS=Ricinus communis GN=RCOM_1722420 PE=4 SV=1
Arabidopsis_pep AT2G20180.1 75.5 84.6 94.9 | Symbols: PIL5, PIF1 | PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5); DNA binding / phytochrome binding / transcription factor | chr2:8704525-8706237 REVERSE
soybean_pep Glyma10g04890.1 131 42.9 50.7  
Medicago_pep IMGA|Medtr7g118010.1 122 41.7 50.5 Helix-loop-helix DNA-binding chr07_pseudomolecule_IMGAG_V3 27689442-27693888 E EGN_Mt090430 20090702
grape_pep GSVIVT01028516001 171 49.0 59.6  
castor_bean_cds 30204.m001816 551 87.1 87.1 Phytochrome-interacting factor, putative
castor_bean_pep 30204.m001816 194 55.6 60.1 Phytochrome-interacting factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c12188 313 90.7 90.7  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0045901.20 length: 209 aa.
IPR001092 Helix-loop-helix DNA-binding domain
method AccNumber shortName E-value location
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
HMMPfam PF00010 HLH 1.2e-05 1-35
HMMSmart SM00353 no description 0.0033 1-40
ProfileScan PS50888 HLH 8.890 1-35
IPR011598 Helix-loop-helix DNA-binding
Cellular Component GO:0005634 nucleus    
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
superfamily SSF47459 HLH, 3.8e-11 1-67
no_ID  
Seg seg seg NA 40-51
59-76
87-103
154-167