Jatropha Genome Database

JcCB0033831.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0033831
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9SVC2_RICCO 611 82.5 87.2 (tr|B9SVC2) Auxin response factor, putative OS=Ricinus communis GN=RCOM_0034710 PE=4 SV=1
Arabidopsis_pep AT2G28350.1 502 67.5 75.7 | Symbols: ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10); miRNA binding / transcription factor | chr2:12114331-12116665 FORWARD
soybean_pep Glyma13g40030.1 492 68.4 77.6  
Medicago_pep IMGA|Medtr2g110140.1 514 71.4 79.9 Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation chr02_pseudomolecule_IMGAG_V3 25776282-25779770 E EGN_Mt090430 20090702
grape_pep GSVIVT01025691001 468 64.9 74.0  
castor_bean_cds 27538.m000327 256 80.1 80.1 Auxin response factor, putative
castor_bean_pep 27538.m000327 611 82.5 87.2 Auxin response factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0033831.10 length: 383 aa.
IPR003340 Transcriptional factor B3
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02362 B3 1.5e-22 112-213
ProfileScan PS50863 B3 12.872 112-214
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0009725 response to hormone stimulus    
Biological Process GO:0045449 regulation of transcription    
HMMPfam PF06507 Auxin_resp 8.4e-34 276-359
no_ID  
Gene3D G3DSA:2.40.330.10 no description 5.3e-39 99-217
Seg seg seg NA 258-281