Jatropha Genome Database

JcCB0033401.20 (JcS_100027.70)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0033401
Scaffold:
JcS_100027 JcCA0004722(+) =JcCA0309351(-) =JcCA0192231(+) =JcCA0095121(+) =JcCB0277631(+) =JcCB0286801(+) =JcCB0033401(-) =JcCA0245291(+) =JcCA0304521(+) =JcCA0144471(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RL60_RICCO 213 61.4 67.6 (tr|B9RL60) Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1667360 PE=4 SV=1
Arabidopsis_pep AT1G75340.1 165 48.0 61.1 | Symbols: | zinc finger (CCCH-type) family protein | chr1:28269153-28271873 REVERSE
soybean_pep Glyma11g11630.1 150 44.4 55.0  
Medicago_pep IMGA|Medtr4g107870.1 140 41.5 52.1 Zinc finger, CCCH-type chr04_pseudomolecule_IMGAG_V3 23681270-23675049 E EGN_Mt090430 20090702
grape_pep GSVIVT01034266001 193 58.1 63.4  
castor_bean_cds 30189.m001642 194 85.0 85.0 nucleic acid binding protein, putative
castor_bean_pep 30189.m001642 213 61.4 67.6 nucleic acid binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0033401.20 length: 176 aa.
IPR000571 Zinc finger, CCCH-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00642 zf-CCCH 7.9e-11 3-27
HMMSmart SM00356 no description 3.3e-07 2-28
ProfileScan PS50103 ZF_C3H1 17.657 2-29
no_ID  
HMMPanther PTHR12547 CCCH 6.4e-06 3-60
Seg seg seg NA 29-58
superfamily SSF90229 CCCH 3.2e-06 1-35