Jatropha Genome Database

JcCB0025751.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0025751
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl D7U4B5_VITVI 357 88.5 90.6 (tr|D7U4B5) Whole genome shotgun sequence of line PN40024, scaffold_44.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00026455001 PE=4 SV=1
Arabidopsis_pep AT5G63960.1 326 81.2 85.9 | Symbols: EMB2780 | EMB2780 (EMBRYO DEFECTIVE 2780); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding | chr5:25599597-25606672 FORWARD
soybean_pep Glyma04g38800.2 349 85.3 89.0  
Medicago_pep IMGA|Medtr3g143090.1 336 83.8 88.0 DNA-directed DNA polymerase B chr03_pseudomolecule_IMGAG_V3 36821997-36824717 E EGN_Mt090430 20090702
grape_pep GSVIVT01026455001 357 88.5 90.6  
castor_bean_cds 30156.m001758 392 91.6 91.6 DNA polymerase delta catalytic subunit, putative
castor_bean_pep 30156.m001758 329 78.8 79.8 DNA polymerase delta catalytic subunit, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0025751.10 length: 191 aa.
IPR006134 DNA-directed DNA polymerase, family B, conserved region
method AccNumber shortName E-value location
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006260 DNA replication    
HMMPfam PF00136 DNA_pol_B 2.5e-18 2-71
IPR006172 DNA-directed DNA polymerase, family B
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process    
HMMPanther PTHR10322 DNA 6.2e-112 1-179
no_ID  
HMMPanther PTHR10322:SF4 DNA 6.2e-112 1-179
Seg seg seg NA 76-91
superfamily SSF56672 DNA/RNA 9.5e-15 7-64