Jatropha Genome Database

JcCB0024231.10 (JcS_104304.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0024231
Scaffold:
JcS_104304 JcCB0024231(+) =JcCA0312681(+) =JcCB0690741(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9S0N0_RICCO 455 53.0 58.3 (tr|B9S0N0) Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1356760 PE=4 SV=1
Arabidopsis_pep AT3G50700.1 266 80.6 86.1 | Symbols: AtIDD2 | AtIDD2 (Arabidopsis thaliana Indeterminate(ID)-Domain 2); nucleic acid binding / transcription factor/ zinc ion binding | chr3:18840945-18842829 FORWARD
soybean_pep Glyma10g05880.1 359 45.6 53.0  
Medicago_pep IMGA|Medtr7g121290.1 298 46.8 54.6 Zinc finger, C2H2-type chr07_pseudomolecule_IMGAG_V3 28520698-28522529 E EGN_Mt090430 20090702
grape_pep GSVIVT01025166001 336 42.6 53.4  
castor_bean_cds 30078.m002347 573 90.3 90.3 nucleic acid binding protein, putative
castor_bean_pep 30078.m002347 455 53.0 58.3 nucleic acid binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c03168 125 83.6 83.6  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0024231.10 length: 437 aa.
IPR007087 Zinc finger, C2H2-type
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 67-87
ProfileScan PS50157 ZINC_FINGER_C2H2_2 10.949 65-87
IPR015880 Zinc finger, C2H2-like
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00355 no description 1.4e+02 65-87
106-136
141-161
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 7.8e-12 104-182
HMMPanther PTHR10593:SF10 UNCHARACTERIZED 7.8e-12 104-182
HMMPfam PF12171 zf-C2H2_jaz 5.4e-05 64-87
Seg seg seg NA 22-38
138-149
224-240
266-278
307-329
superfamily SSF57667 C2H2 3.9e-05 123-167
64-89