Jatropha Genome Database

JcCB0023791.20 (JcS_109072.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0023791
Scaffold:
JcS_109072 JcCB0023791(+) =JcCB0766101(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9REB2_RICCO 320 86.7 92.8 (tr|B9REB2) Mads box protein, putative OS=Ricinus communis GN=RCOM_1619830 PE=4 SV=1
Arabidopsis_pep AT1G69120.1 232 61.9 73.7 | Symbols: AP1, AGL7 | AP1 (APETALA1); DNA binding / protein binding / protein heterodimerization/ transcription activator/ transcription factor | chr1:25982576-25986102 REVERSE
soybean_pep Glyma16g13070.1 260 73.2 83.8  
Medicago_pep IMGA|Medtr8g077590.1 231 71.1 84.4 Transcription factor, MADS-box; Transcription factor, K-box chr08_pseudomolecule_IMGAG_V3 15487044-15481223 E EGN_Mt090430 20090702
grape_pep GSVIVT01012250001 274 75.7 86.2  
castor_bean_cds 30174.m009079 591 88.8 88.8 mads box protein, putative
castor_bean_pep 30174.m009079 320 86.7 92.8 mads box protein, putative
JAT_13201ests gi|268519531|gb|FM887998.1|FM887998 87.7 100.0 100.0 FM887998 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001304, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0023791.20 length: 181 aa.
IPR002487 Transcription factor, K-box
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF01486 K-box 1.5e-29 15-112
ProfileScan PS51297 K_BOX 16.903 26-116
no_ID  
Coil coil coiled-coil NA 26-54
60-84
HMMPanther PTHR11945 MADS 2.1e-31 1-120
HMMPanther PTHR11945:SF19 MADS 2.1e-31 1-120